Welcome to the new version of CaltechAUTHORS. Login is currently restricted to library staff. If you notice any issues, please email coda@library.caltech.edu
Published September 23, 2022 | Published + Supplemental Material
Journal Article Open

FathomNet: A global image database for enabling artificial intelligence in the ocean

Abstract

The ocean is experiencing unprecedented rapid change, and visually monitoring marine biota at the spatiotemporal scales needed for responsible stewardship is a formidable task. As baselines are sought by the research community, the volume and rate of this required data collection rapidly outpaces our abilities to process and analyze them. Recent advances in machine learning enables fast, sophisticated analysis of visual data, but have had limited success in the ocean due to lack of data standardization, insufficient formatting, and demand for large, labeled datasets. To address this need, we built FathomNet, an open-source image database that standardizes and aggregates expertly curated labeled data. FathomNet has been seeded with existing iconic and non-iconic imagery of marine animals, underwater equipment, debris, and other concepts, and allows for future contributions from distributed data sources. We demonstrate how FathomNet data can be used to train and deploy models on other institutional video to reduce annotation effort, and enable automated tracking of underwater concepts when integrated with robotic vehicles. As FathomNet continues to grow and incorporate more labeled data from the community, we can accelerate the processing of visual data to achieve a healthy and sustainable global ocean.

Additional Information

© The Author(s) 2022. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. Seed funding for FathomNet was provided by National Geographic Society (518018 to KK), National Oceanic and Atmospheric Administration (NA18OAR4170105 to KCB), and the Monterey Bay Aquarium Research Institute through generous support from the David and Lucile Packard Foundation (to KK). Additional funding support has been provided by National Geographic Society (NGS-86951T-21 to KCB), the National Science Foundation (OTIC 1812535 and Convergence Accelerator 2137977; to KK), and the Monterey Bay Aquarium Research Institute (to KK). Additional individuals whose contributions enriched FathomNet include members of MBARI's Video Lab (Nancy Jacobsen Stout, Kyra Schlining, Susan von Thun, Kristine Walz, Larissa Lemon), Bioinspiration Lab (Joost Daniels, Paul Roberts, Krish Mehta), and Alexandra Lapides. National Geographic Society contributions were facilitated by Denley Delaney and Alan Turchik. Data availability: Accession codes - All code and data used for this manuscript can be found on the FathomNet Code Repository62 at www.github.com/fathomnet and the FathomNet database34 at www.fathomnet.org. The referenced machine learning models for the benthic and midwater use cases can be found either listed in the FathomNet Model Zoo63 at www.github.com/fathomnet/models, or at44 and47, respectively. Supplementary information is available for this paper, which includes a figure, table, and video. Contributions: K.K., K.C.B., and B.W. conceived FathomNet. E.O. generated database statistics with early contributions from O.B.; E.O., B.W., and K.K. worked on representative use cases. B.S. designed and built the database, VARS-to-FathomNet data pipelines, API, and website back-end; K.B. developed the Python API and worked on data ingestion from VARS to FathomNet. E.B. contributed to the refinement of the FathomNet website front-end. M.C. facilitated data contributions and ran dataset statistics on NOAA-OER's contributions. B.W. developed Tator-to-FathomNet data pipelines, which included NOAA and NGS data. L.L. and G.S. generated most of the labeled data from VARS that are contained in FathomNet, and L.L. conducted labeling experiments for the included use cases. K.K. wrote the manuscript with significant contributions from E.O. All authors reviewed the manuscript. The authors declare no competing interests.

Attached Files

Published - s41598-022-19939-2.pdf

Supplemental Material - 41598_2022_19939_MOESM1_ESM.pdf

Files

s41598-022-19939-2.pdf
Files (7.4 MB)
Name Size Download all
md5:2cc58fd56ea7091c19941c6c2dbd1095
7.0 MB Preview Download
md5:c3231c54ea8bf82ec3f51279ec62b12f
370.8 kB Preview Download

Additional details

Created:
August 22, 2023
Modified:
October 23, 2023