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Published March 1, 2024 | Correction
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Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

Jain, Sanjay ORCID icon
Pei, Liming ORCID icon
Spraggins, Jeffrey M. ORCID icon
Angelo, Michael
Carson, James P.
Gehlenborg, Nils
Ginty, Fiona
Gonçalves, Joana P. ORCID icon
Hagood, James S. ORCID icon
Hickey, John W. ORCID icon
Kelleher, Neil L. ORCID icon
Laurent, Louise C.
Lin, Shin
Lin, Yiing ORCID icon
Liu, Huiping ORCID icon
Naba, Alexandra ORCID icon
Nakayasu, Ernesto S. ORCID icon
Qian, Wei-Jun ORCID icon
Radtke, Andrea ORCID icon
Robson, Paul ORCID icon
Stockwell, Brent R.
Van de Plas, Raf
Vlachos, Ioannis S.
Zhou, Mowei
Ahn, Kyung Jin
Allen, Jamie
Anderson, David M.
Anderton, Christopher R.
Curcio, Christine
Angelin, Alessia
Arvanitis, Constadina
Atta, Lyla
Awosika-Olumo, Demi
Bahmani, Amir
Bai, Huajun
Balderrama, Karol
Balzano, Leandro
Bandyopadhyay, Gautam
Bandyopadhyay, Shovik
Bar-Joseph, Ziv
Barnhart, Kurt
Barwinska, Daria
Becich, Michael
Becker, Laren
Becker, Winston
Bedi, Kenneth
Bendall, Sean
Benninger, Kathy
Betancur, David
Bettinger, Keith
Billings, Sunteasja
Blood, Philip
Bolin, Daniel
Border, Samuel
Bosse, Marc
Bramer, Lisa
Brewer, Maya
Brusko, Maigan
Bueckle, Andreas
Burke, Karl
Burnum-Johnson, Kristin
Butcher, Eugene
Butterworth, Elizabeth
Cai, Long1 ORCID icon
Calandrelli, Riccardo
Caldwell, Michael
Campbell-Thompson, Martha
Cao, Dongfeng
Cao-Berg, Ivan
Caprioli, Richard
Caraccio, Chiara
Caron, Anita
Carroll, Megan
Chadwick, Chrystal
Chen, Angela
Chen, Derek
Chen, Fei
Chen, Haoran
Chen, Jing
Chen, Li
Chen, Lu
Chiacchia, Kenneth
Cho, Sanghee
Chou, Peter
Choy, Lisa
Cisar, Cecilia
Clair, Geremy
Clarke, Laura
Clouthier, Kelly A.
Colley, Madeline E.
Conlon, Kristin
Conroy, John
Contrepois, Kevin
Corbett, Anthony
Corwin, Alex
Cotter, Daniel
Courtois, Elise
Cruz, Aaron
Csonka, Christopher
Czupil, Kimberley
Daiya, Vicky
Dale, Kali
Davanagere, Shakeel Ahamed
Dayao, Monica
de Caestecker, Mark P.
Decker, Aubrianna
Deems, Stephen
Degnan, David
Desai, Tushar
Deshpande, Vikrant
Deutsch, Gail
Devlin, Michelle
Diep, Dinh1 ORCID icon
Dodd, Carla
Donahue, Sean
Dong, Weixiu ORCID icon
dos Santos Peixoto, Rafael
Duffy, Michael ORCID icon
Dufresne, Martin
Duong, Thu Elizabeth
Dutra, Jennifer
Eadon, Michael T.
El-Achkar, Tarek M.
Enninful, Archibald
Eraslan, Gokcen
Eshelman, Diane
Espin-Perez, Almudena
Esplin, Edward D.
Esselman, Allison
Falo, Louis D.
Falo, Louis
Fan, Jean
Fan, Rong
Farrow, Melissa A.
Farzad, Negin
Favaro, Patricia
Fermin, Jamie
Filiz, Ferda
Filus, Shane
Fisch, Kathleen ORCID icon
Fisher, Eyal
Fisher, Stephen
Flowers, Katelyn
Flynn, William F.
Fogo, Agnes B.
Fu, Dongtao
Fulcher, James
Fung, Anthony
Furst, Derek
Gallant, Michael
Gao, Fu
Gao, Yu
Gaulton, Kyle
Gaut, Joseph P.
Gee, James ORCID icon
Ghag, Reetika R.
Ghazanfar, Shila
Ghose, Soumya
Gisch, Debora
Gold, Ilan
Gondalia, Aashay
Gorman, Brittney
Greenleaf, William ORCID icon
Greenwald, Noah ORCID icon
Gregory, Brian
Guo, Rong
Gupta, Rajat
Hakimian, Hunter
Haltom, Jeff
Halushka, Marc
Han, Kyu Sang
Hanson, Casey
Harbury, Pehr
Hardi, Josef
Harlan, Linda
Harris, Raymond C.
Hartman, Austin
Heidari, Elyas
Helfer, Jesse
Helminiak, David
Hemberg, Martin
Henning, Nathaniel
Herr, Bruce W.
Ho, Jonhan
Holden-Wiltse, Jeanne
Hong, Seung-Hyun
Hong, Young-Kwon
Honick, Brendan
Hood, Greg ORCID icon
Hu, Po
Hu, Qiwen
Huang, Molly
Huyck, Heidie
Imtiaz, Tamjid
Isberg, Olof Gerdur
Itkin, Maxim
Jackson, Dana
Jacobs, Marni
Jain, Yashvardhan
Jewell, David
Jiang, Lihua
Jiang, Zhenghui G.
Johnston, Sarah
Joshi, Pujan
Ju, Yingnan
Judd, Audra
Kagel, Adam
Kahn, Ari
Kalavros, Nikolaos
Kalhor, Kian
Karagkouni, Dimitra
Karathanos, Thomas
Karunamurthy, Arivarasan
Katari, Suhas
Kates, Heather
Kaushal, Madhurima
Keener, Nicholas
Keller, Mark
Kenney, Mariah
Kern, Colin
Kharchenko, Peter ORCID icon
Kim, Junhyong ORCID icon
Kingsford, Carl
Kirwan, Jessica
Kiselev, Vladimir
Kishi, Jocelyn
Kitata, Reta Birhanu
Knoten, Amanda
Kollar, Charles
Krishnamoorthy, Praveen
Kruse, Angela R. S.
Kuang, Da
Kundaje, Anshul ORCID icon
Kutschera, Eric
Kwon, Yumi
Lake, Blue B. ORCID icon
Lancaster, Samuel
Langlieb, Jonah
Lardenoije, Roy
Laronda, Monica
Laskin, Julia
Lau, Ken
Lee, Hayan
Lee, Maria
Lee, Mejeong
Levites Strekalova, Yulia
Li, Dongshunyi
Li, Jennifer
Li, Jilong
Li, Xiangtang
Li, Zhi
Liao, Yen-Chen
Liaw, Tiffany
Lin, Pei
Lin, Yulieh
Lindsay, Scott
Liu, Chunjie
Liu, Yang
Liu, Yuan
Lott, Marie
Lotz, Martin ORCID icon
Lowery, Lisa
Lu, Peiran
Lu, Xinyue
Lucarelli, Nicholas
Lun, Xiaokang
Luo, Zhifei
Ma, Jian
Macosko, Evan ORCID icon
Mahajan, Mayank
Maier, Libby
Makowski, Danika
Malek, Morad
Manthey, David
Manz, Trevor
Margulies, Kenneth
Marioni, John
Martindale, Matthew
Mason, Cayla
Mathews, Clayton
Maye, Peter
McCallum, Chuck
McDonough, Elizabeth
McDonough, Liz
Mcdowell, Hannah
Meads, Morgan
Medina-Serpas, Miguel
Melo Ferreira, Ricardo
Messinger, Jeffrey
Metis, Kay
Migas, Lukasz G.
Miller, Brendan
Mimar, Sayat
Minor, Brittany
Misra, Ravi
Missarova, Alsu
Mistretta, Christopher
Moens, Roger
Moerth, Eric
Moffitt, Jeffrey
Molla, Gesmira
Monroe, Matthew
Monte, Emma
Morgan, Mike
Muraro, Daniele
Murphy, Bob
Murray, Evan
Musen, Mark A. ORCID icon
Naglah, Ahmed
Nasamran, Chanond
Neelakantan, Taruna
Nevins, Stephanie
Nguyen, Hieu
Nguyen, Nam
Nguyen, Tram
Nguyen, Tri ORCID icon
Nigra, Deb
Nofal, Michel
Nolan, Garry
Nwanne, Gerald
O'Connor, Martin
Okuda, Kenichi
Olmer, Merissa
O'Neill, Kathleen
Otaluka, Nancy
Pang, Minxing
Parast, Mana
Pasa-Tolic, Ljiljana
Paten, Benedict
Patterson, Nathan Heath
Peng, Ting
Phillips, Gesina
Pichavant, Mina
Piehowski, Paul
Pilner, Hannah
Pingry, Ellie
Pita-Juarez, Yered
Plevritis, Sylvia
Ploumakis, Athanasios
Pouch, Alison
Pryhuber, Gloria
Puerto, Juan
Qaurooni, Danial
Qin, Ling
Quardokus, Ellen M.
Rajbhandari, Presha
Rakow-Penner, Rebecca
Ramasamy, Ramalakshmi
Read, David
Record, Elizabeth G.
Reeves, David
Ricarte, Allyson
Rodríguez-Soto, Ana
Ropelewski, Alexander ORCID icon
Rosario, Jean
Roselkis, Morla-Adames
Rowe, David
Roy, Tarun Kanti
Ruffalo, Matt
Ruschman, Nancy
Sabo, Angela
Sachdev, Nina
Saka, Sinem
Salamon, Diane
Sarder, Pinaki
Sasaki, Hiroshi
Satija, Rahul
Saunders, Diane
Sawka, Riley
Schey, Kevin
Schlehlein, Heidi
Scholten, David
Schultz, Sarah
Schwartz, Lauren
Schwenk, Melissa
Scibek, Robin
Segre, Ayellet
Serrata, Matthew
Shands, Walter
Shen, Xiaotao
Shendure, Jay ORCID icon
Shephard, Holly
Shi, Lingyan
Shi, Tujin
Shin, Dong-Guk
Shirey, Bill
Sibilla, Max
Silber, Michal
Silverstein, Jonathan
Simmel, Derek
Simmons, Alan
Singhal, Dhruv
Sivajothi, Santhosh
Smits, Thomas
Soncin, Francesca
Song, Qi
Stanley, Valentina
Stuart, Tim
Su, Hanquan
Su, Pei
Sun, Xin
Surrette, Christine
Swahn, Hannah
Tan, Kai
Teichmann, Sarah ORCID icon
Tejomay, Abhiroop
Tellides, George
Thomas, Kathleen
Thomas, Tracey
Thompson, Marissa
Tian, Hua
Tideman, Leonoor
Trapnell, Cole ORCID icon
Tsai, Albert G.
Tsai, Chia-Feng
Tsai, Leo
Tsui, Elizabeth
Tsui, Tina
Tung, Jason
Turner, Morgan
Uranic, Jackie
Vaishnav, Eeshit Dhaval ORCID icon
Varra, Sricharan Reddy
Vaskivskyi, Vasyl
Velickovic, Dusan
Velickovic, Marija
Verheyden, Jamie
Waldrip, Jessica
Wallace, Douglas
Wan, Xueyi
Wang, Allen
Wang, Fusheng
Wang, Meng
Wang, Shuoshuo
Wang, Xuefei1
Wasserfall, Clive
Wayne, Leonard
Webber, James
Weber, Griffin M.
Wei, Bei
Wei, Jian-Jun
Weimer, Annika
Welling, Joel
Wen, Xingzhao
Wen, Zishen
Williams, MacKenzie
Winfree, Seth
Winograd, Nicholas
Woodard, Abashai
Wright, Devin
Wu, Fan
Wu, Pei-Hsun
Wu, Qiuyang
Wu, Xiaodong
Xing, Yi
Xu, Tiangyang
Yang, Manxi
Yang, Mingyu
Yap, Joseph
Ye, Dong Hye ORCID icon
Yin, Peng
Yuan, Zhou
Yun, Chi (Jina)1
Zahraei, Ali
Zemaitis, Kevin
Zhang, Bo
Zhang, Caibin
Zhang, Chenyu
Zhang, Chi
Zhang, Kun
Zhang, Shiping
Zhang, Ted
Zhang, Yida
Zhao, Bingqing
Zhao, Wenxin
Zheng, Jia Wen
Zhong, Sheng
Zhu, Bokai
Zhu, Chenchen
Zhu, Diming
Zhu, Quan
Zhu, Ying
Börner, Katy ORCID icon
Snyder, Michael P. ORCID icon
HuBMAP Consortium
  • 1. ROR icon California Institute of Technology

Abstract

The Human BioMolecular Atlas Program (HuBMAP) aims to create a multi-scale spatial atlas of the healthy human body at single-cell resolution by applying advanced technologies and disseminating resources to the community. As the HuBMAP moves past its first phase, creating ontologies, protocols and pipelines, this Perspective introduces the production phase: the generation of reference spatial maps of functional tissue units across many organs from diverse populations and the creation of mapping tools and infrastructure to advance biomedical research.

Copyright and License

© Springer Nature Limited 2023. 

Errata

Correction to: Nature Cell Biology https://doi.org/10.1038/s41556-023-01194-w. Published online 19 July 2023.

In the version of this article originally published, the name of Tianyang Xu was misspelled as Tiangyang Xu. The name has been corrected in the HTML and PDF versions of the article.

Code Availability

The HuBMAP Consortium GitHub at https://github.com/hubmapconsortium has 120 repositories that support data ingest, analysis, visualization and search plus HRA construction and usage. Documentation is available at https://software.docs.hubmapconsortium.org/apis.html.

Acknowledgement

We thank L. M. McGuire, SciStories, F. Goncalves, H. Schlehlein and V. A. Deshpande for their efforts in designing and creating graphics. We thank A. Honkala for assistance with manuscript formatting. We thank Z. Galis from the National Heart, Lung, and Blood Institute for many useful comments. Support for title page creation and format was provided by AuthorArranger, a tool developed at the National Cancer Institute. The authors gratefully acknowledge NIH HuBMAP grants U54HL165442 and U01HL166058 (L.P.); U54DK134301 and OT2OD033753 (S.J.); U54EY032442, U54DK120058 and U54DK134302 (J.M.S.); OT2OD033756 and OT2OD026671 (K.B.); UH3CA246635 (N.L.K.); UG3CA256967 (H.L.); U54HG010426 (M.P.S.); UH3CA246633 (M.A.); U54HD104393 (L.C.L. and P.R.); U54DK127823 (E.S.N., J.P.C. and W.-J.Q.); OT2OD033758 (N.G.); UH3CA246594 (F.G.); U54EY032442 and U54DK134302 (J.P.G.); U54HL145611 (S.L. and Y.L.); U01HG012680 (A.N.); U54DK120058, U54EY032442 and U54DK134302 (B.R.S.); UG3CA256959 (M.Z.); and U54HL165440 (I.S.V.). The authors are also supported by these grants: 2U01DK114933, P50DK133943 and U24DK135157 (S.J.); U54HL145608 and U54HL165443 (J.S.H.); U24CA268108 and U2CDK114886 (K.B.); Department of Defense W81XWH-22-1-0058 and Additional Ventures (L.P.). J.W.H. was supported by an NIH T32 Fellowship (T32CA196585) and an American Cancer Society: Roaring Fork Valley Postdoctoral Fellowship (PF-20-032-01-CSM). This work was supported, in part, by the Intramural Research Program of the NIH, National Institute of Allergy and Infectious Diseases (NIAID) and National Cancer Institute (NCI) (A.J.R.). These authors contributed equally: Sanjay Jain, Liming Pei, Jeffrey M. Spraggins, Katy Börner, Michael P. Snyder. Contributions. S.J., L.P., J.M.S., K.B. and M.P.S. conceived the idea and wrote the first draft of the manuscript and revisions. M.A., J.P.C., N.G., F.G., J.P.G., J.S.H., J.W.H., N.L.K., L.C.L., S.L., Y.L., H.L., A.N., E.S.N., W.-J.Q., A.R., P.R., B.R.S., R.V., I.S.V. and M.Z. contributed to manuscript revision. 

Conflict of Interest

Competing interests. The authors declare the following competing interests. F.G. is an employee of GE Research. B.R.S. is an inventor on patents and patent applications involving small-molecule-drug discovery and the 3F3 anti-Ferroptotic Membrane (3F3-FMA) antibody; co-founded and serves as a consultant to Inzen Therapeutics, Nevrox, Exarta Therapeutics and ProJenX; and serves as a consultant to Weatherwax Biotechnologies and Akin Gump Strauss Hauer and Feld. M.P.S. is a co-founder and an advisory board member of Personalis, Qbio, January AI, Mirvie, Filtricine, Fodsel, Lollo and Protos. I.S.V. consults for Guidepoint Global, Cowen, Mosaic and NextRNA. N.G. is a co-founder and an equity owner of Datavisyn. H.L. is a co-founder and an equity owner of ExoMira Medicine. The remaining authors declare no competing interests.

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Additional details

Created:
March 19, 2024
Modified:
March 19, 2024