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Published June 29, 2023 | Submitted + Supplemental Material
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Enantio- and Diastereoenriched Enzymatic Synthesis of 1,2,3-Polysubstituted Cyclopropanes from (Z/E)-Trisubstituted Enol Acetates

Abstract

In nature and synthetic chemistry, stereoselective [2+1] cyclopropanation is the most prevalent strategy for the synthesis of chiral cyclopropanes, a class of key pharmacophores in pharmaceuticals and bioactive natural products. One of the most extensively studied reactions in the organic chemist's arsenal, stereoselective [2+1] cyclopropanation, largely relies on the use of stereodefined olefins, which require elaborate laboratory synthesis or tedious separation to ensure high stereoselectivity. Here we report engineered hemoproteins derived from a bacterial cytochrome P450 that catalyze the synthesis of chiral 1,2,3-polysubstituted cyclopropanes, regardless of the stereopurity of the olefin substrates used. Cytochrome P450_(BM3) variant IC-G3 exclusively converts (Z)-enol acetates to enantio- and diastereoenriched cyclopropanes and in our model reaction delivers a leftover (E)-enol acetate with 98% stereopurity, using whole Escherichia coli cells. IC-G3 was further engineered with a single mutation to enable the biotransformation of (E)-enol acetates to α-branched ketones with high levels of enantioselectivity while simultaneously catalyzing the cyclopropanation of (Z)-enol acetates with excellent activities and selectivities. We conducted docking studies and molecular dynamics simulations to understand how active-site residues distinguish between the substrate isomers and enable the enzyme to perform these distinct transformations with such high selectivities. Computational studies suggest the observed enantio- and diastereoselectivities are achieved through a stepwise pathway. These biotransformations streamline the synthesis of chiral 1,2,3-polysubstituted cyclopropanes from readily available mixtures of (Z/E)-olefins, adding a new dimension to classical cyclopropanation methods.

Additional Information

This work is licensed under a Creative Commons Attribution 4.0 International License, which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. Support by the National Science Foundation Division of Molecular and Cellular Biosciences (MCB-2016137 to F.H.A) and the National Science Foundation Division of Chemistry (CHE-1764328 to K.N.H.) is gratefully acknowledged. R.M. acknowledges support from the Swiss National Science Foundation (SNSF) Early Mobility Postdoctoral Fellowship (P2ELP2_195118). D.J.W. acknowledges support fromthe National Science Foundation Graduate Research Fellowship (DGE-1745301). C.S.J. acknowledges support from the Ruth L. Kirchstein NIH Postdoctoral Fellowship (1F32GM145009). T.R. acknowledges support from the Alexander von Humboldt-Foundation (Feodor Lynen fellowship). We thank Dr. Scott C. Virgil for the maintenance of the Caltech Center for Catalysis and Chemical Synthesis (3CS). We thank Dr. Michael K. Takase and Lawrence M. Henling for assistance with X-ray crystallographic data collection. We thank Dr. Mona Shahgoli for mass spectrometry assistance. We thank Dr. David VanderVelde for the maintenance of the Caltech NMR facility. We also thank Dr. Sabine Brinkmann-Chen and Dr. Zhen Liu for their helpful discussions and comments on the manuscript. Calculations were performed on the Hoffman2 cluster at the University of California, Los Angeles. Anton 2 computer time was provided by the Pittsburgh Supercomputing Center (PSC) through Grant R01GM116961 from the National Institutes of Health. The Anton 2 machine at PSC was generously made available by D.E. Shaw Research. Author contributions. R.M. conceived and designed the overall project with F.H.A. providing guidance. R.M. performed the initial screening of heme proteins and the directed evolution experiments. R.M. and D.J.W. studied the substrate scope. R.M., D.J.W. and S.G. synthesized the olefin substrates 1; R.M. and D.J.W. synthesized diazoacetonitrile 2a. C.S.J. and T.R. carried out the computational studies with K.N.H providing guidance. A.D. conducted crystallization of 3j and 3k. D.M.T. performed sequencing of SSM libraries based on IC-G3. R.M., D.J.W., C.S.J. and F.H.A wrote the manuscript with input from all authors. The authors declare no competing interests.

Attached Files

Submitted - nihpp-rs2802333v1.pdf

Supplemental Material - 520dc4f8c4bf764a8e35237d.pdf

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Additional details

Created:
August 20, 2023
Modified:
December 13, 2023