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Published April 6, 2023 | Published
Journal Article Open

Cryo-EM structure of the Agrobacterium tumefaciens T4SS-associated T-pilus reveals stoichiometric protein-phospholipid assembly

Abstract

Agrobacterium tumefaciens causes crown gall disease in plants by the horizontal transfer of oncogenic DNA. The conjugation is mediated by the VirB/D4 type 4 secretion system (T4SS) that assembles an extracellular filament, the T-pilus, and is involved in mating pair formation between A. tumefaciens and the recipient plant cell. Here, we present a 3 Å cryoelectron microscopy (cryo-EM) structure of the T-pilus solved by helical reconstruction. Our structure reveals that the T-pilus is a stoichiometric assembly of the VirB2 major pilin and phosphatidylglycerol (PG) phospholipid with 5-start helical symmetry. We show that PG head groups and the positively charged Arg 91 residues of VirB2 protomers form extensive electrostatic interactions in the lumen of the T-pilus. Mutagenesis of Arg 91 abolished pilus formation. While our T-pilus structure is architecturally similar to previously published conjugative pili structures, the T-pilus lumen is narrower and positively charged, raising questions of whether the T-pilus is a conduit for ssDNA transfer.

Additional Information

© 2023 Elsevier Ltd. We thank Dr. Songye Chen, Caltech cryo-EM facility, for assistance during data collection; Dr. Tsui-Fen Chou, Dr. Brett Lomenick, and Dr. Jeff Jones from the Caltech Proteome Exploration Laboratory for conducting the protein mass spectrometry analysis. We also thank Dr. Kevin Williams and UCLA Lipidomics for performing lipid extraction and lipid data collection and giving valuable advice in lipidomic experimental design and data interpretation. This project was funded by a National Institutes of Health grant (R01 AI127401 to G.J.J.), a National Health and Medical Research Council grant (APP1196924 to D.G.), and a Natural Sciences and Engineering Research Council of Canada Discovery grant (RGPIN 04345 to E.I.T.). S.K. is supported by the Swedish Research Council (2019-06293). Author contributions: Conceptualization, G.J.J. and D.G.; methodology, S.K., A.N., A.D., E.I.T., M.D.J., and D.G.; investigation, S.K., A.N., AD., M.D.J., and D.G.; formal analysis, S.K., A.N., and D.G.; writing – original draft, S.K., D.G., and A.N.; writing – review & editing, S.K., A.N., M.D.J., E.I.T., A.D., D.G., and G.J.J.; visualization, A.N., D.G., and S.K.; supervision, A.D., G.J.J., and D.G.; funding acquisition, A.D., G.J.J., and D.G. The authors declare no competing interests. Data and code availability: The Cryo-EM map and model have been deposited to EMBD (ID: EMD-28957) and RCSB (PDB ID: 8FAI), respectively. The raw data is available upon request. This paper does not report original code. Any additional information required to reanalyze the data, including lipidomics raw data, presented in this study is available from the lead contact upon request.

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Additional details

Created:
April 10, 2024
Modified:
April 10, 2024