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Published May 19, 2022 | public
Journal Article

In vivo hypermutation and continuous evolution

Abstract

Directed evolution has revolutionized biomolecular engineering by applying cycles of mutation, amplification and selection to genes of interest (GOIs). However, classical directed evolution methods that rely on manually staged evolutionary cycles constrain the scale and depth of the evolutionary search that is possible. We describe genetic systems that achieve cycles of rapid mutation, amplification and selection fully inside living cells, enabling the continuous evolution of GOIs as cells grow. These systems advance the scale, evolutionary search depth, ease and overall power of directed evolution and access important new areas of protein evolution and engineering.

Additional Information

The authors thank members of their groups for insightful discussions. This work was funded by National Institutes of Health (NIH) National Institute of General Medical Sciences (NIGMS) 1R35GM139513 (C.C.L.); NIH NIGMS 1R35GM136354 (M.D.S.); MIT Robert J Silbey Fellowship (A.A.M.); MIT School of Science Fund for Future of Science (A.A.M.); US Department of Energy, Office of Science, Basic Energy Sciences under Award DE-SC0020153 (A.D.H.); Innovative Genomics Institute and Laboratory for Genomics Research (J.E.H., J.E.D. and D.V.S.); UC Berkeley Miller Basic Research Fellowship (Q.Z.); NIH National Institute of Biomedical Imaging and Bioengineering (NIBIB) 1R01EB027793 (A.S.K.); Department of Defense (DoD) Vannevar Bush Faculty Fellowship N00014-20-1-2825 (A.S.K.); NIH NIGMS 1R01GM125887 (F.H.A.); and Ministerio de Ciencia e Innovación - Consejo Superior de Investigaciones Científicas (MICIN-CSIC) PTI + REC-EU SGL2103051 and EU Horizon 2020 research and innovation programme FET Open 965018-BIOCELLPHE (L.A.F.). The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH or other funding agencies.

Additional details

Created:
August 22, 2023
Modified:
December 22, 2023