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Published January 11, 2022 | Submitted + Supplemental Material
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Intravenous gene transfer throughout the brain of infant Old World primates using AAV

Abstract

Adeno-associated viruses (AAVs) can enable robust and safe gene delivery to the mammalian central nervous system (CNS). While the scientific community has developed numerous neurotropic AAV variants for systemic gene-transfer to the rodent brain, there are few AAVs that efficiently access the CNS of higher order primates. We describe here AAV.CAP-Mac, an engineered AAV variant that enables systemic, brain-wide gene delivery in infants of two Old World primate species--the rhesus macaque (Macaca mulatta) and the green monkey (Chlorocebus sabaeus). We identified CAP-Mac using a multi-species selection strategy, initially screening our library in the adult common marmoset (Callithrix jacchus) and narrowing our pool of test-variants for another round of selection in infant macaques. In individual characterization, CAP-Mac robustly transduces human neurons in vitro and Old World primate neurons in vivo, where it targets all lobes of cortex, the cerebellum, and multiple subcortical regions of disease relevance. We use CAP-Mac for Brainbow-like multicolor labeling of macaque neurons throughout the brain, enabling morphological reconstruction of both medium spiny neurons and cortical pyramidal cells. Because of its broad distribution throughout the brain and high neuronal efficiency in infant Old World primates compared to AAV9, CAP-Mac shows promise for researchers and clinicians alike to unlock novel, noninvasive access to the brain for efficient gene transfer.

Additional Information

The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license. This version posted January 9, 2022. We wish to thank the entire Gradinaru laboratory and members of Capsida Biotherapeutics for helpful discussions. We thank Deborah Lidgate for her helpful input in writing and planning the paper. We thank Catherine Oikonomou for help with manuscript editing. We thank Mate Borsos for his assistance in mouse pup injections. We thank Xinhong Chen, Anat Kahan, and Gerard M. Coughlin for their helpful discussion and input in planning rhesus macaque experiments and experimental cargo. Capsida would like to thank Michael Weed and the whole team at Virscio, Inc. for their help with the design and execution of green monkey experiments. We are grateful to Igor Antoshechkin and the Millar and Muriel Jacobs Genetics and Genomics Core at the California Institute of Technology for assistance with next-generation sequencing. We are grateful to the research and veterinarian staff at the California National Primate Research Center (CNPRC) for their aid with studies in rhesus macaques. This work was funded by grants from the National Institutes of Health (NIH) to V.G. (NIH Pioneer DP1OD025535), to the California National Primate Research Center (NIH: P51OD011107), and BRAIN Armamentarium U01 UMH128336A (to V.G., T.F.M., and A.S.F.). Additional funding includes: (to V.G. and A.S.F.) The Michael J. Fox Foundation for Parkinson's Research as part of the Aligning Science Across Parkinson's Initiative (ASAP-020495). Figures were created using images from BioRender.com. Author contributions: M.R.C. and N.C.F. wrote the manuscript, with input from all authors. M.R.C. designed, performed, and analyzed the data for the rhesus macaque and rodent experiments and prepared all figures. N.C.F., K.C. and B.E.D. designed, N.C.F. and K.C. performed, and N.C.F. analyzed the associated data for the viral library screening experiments in common marmosets. N.C.F. and N.G. designed, performed and analyzed the data of the pooled testing experiments in rhesus macaques. N.C.F. and N.G. designed, N.C.F. N.G., J.C.O. and K.M.R. performed the green monkey experiments, and J.C.O. and K.M.R. analyzed the associated data and helped prepare the associated figures. J.S., J.W. and R.J.B. designed and performed the human neuron experiments, analyzed the associated data and prepared the associated figures. L.J.C. designed and performed the rhesus macaque experiments. C.M.A. performed the rhesus macaque spinal cord and dorsal root ganglia analysis and imaging. T.F.M. analyzed the round 2 viral library screening experiment in the common marmoset and generated the sequence clustering graphs. M.J.J. helped with the imaging analysis. J.V. helped perform the rhesus macaque neuron tracing. J.P. supervised aspects of the common marmoset experiments. A.S.F. designed, performed, and supervised aspects of the rhesus macaque experiments. N.C.F. supervised all aspects of the green monkey and iPSC work. V.G. supervised all aspects of the library screening, pooled testing and rhesus macaque work and contributed to associated experimental design, data analysis, and manuscript writing. Competing Interest Statement: The California Institute of Technology has filed and licensed patent applications for the work described in this manuscript, with N.C.F., N.G. and V.G. listed as inventors (US Patent application no. PCT/US21/46904). V.G. is a co-founder and board member and N.C.F. and N.G. are co-founders and officers of Capsida Biotherapeutics, a fully integrated AAV engineering and gene therapy company. The remaining authors declare no competing interests.

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Submitted - 2022.01.08.475342v1.full.pdf

Supplemental Material - media-1.pdf

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Additional details

Created:
August 20, 2023
Modified:
December 13, 2023