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Published November 17, 2021 | Published
Journal Article Open

The Open Reaction Database

Abstract

Chemical reaction data in journal articles, patents, and even electronic laboratory notebooks are currently stored in various formats, often unstructured, which presents a significant barrier to downstream applications, including the training of machine-learning models. We present the Open Reaction Database (ORD), an open-access schema and infrastructure for structuring and sharing organic reaction data, including a centralized data repository. The ORD schema supports conventional and emerging technologies, from benchtop reactions to automated high-throughput experiments and flow chemistry. The data, schema, supporting code, and web-based user interfaces are all publicly available on GitHub. Our vision is that a consistent data representation and infrastructure to support data sharing will enable downstream applications that will greatly improve the state of the art with respect to computer-aided synthesis planning, reaction prediction, and other predictive chemistry tasks.

Additional Information

© 2021 The Authors. Published by American Chemical Society. Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) Received: September 15, 2021; Published: November 2, 2021. There are many people to thank for help in getting this initiative started: all of the respondents to our original use case survey in 2019, the full advisory board, and all of the direct contributors to ord-data. We also thank Nathan Kim for helping with infrastructure development, Brian Lee for helping with feedback and beta testing, and Devin Sandberg and Zan Armstrong for design advice. Cloud computing resources and legal support were provided by Google. S.M.K. acknowledges support from Google and Relay Therapeutics. Additional GitHub data storage and bandwidth were provided through the GitHub Education program. The authors declare no competing financial interest.

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Additional details

Created:
September 22, 2023
Modified:
October 23, 2023