Estimation of Nitrogen in Rice Crops from UAV-Captured Images
Abstract
Leaf nitrogen (N) directly correlates to chlorophyll production, affecting crop growth and yield. Farmers use soil plant analysis development (SPAD) devices to calculate the amount of chlorophyll present in plants. However, monitoring large-scale crops using SPAD is prohibitively time-consuming and demanding. This paper presents an unmanned aerial vehicle (UAV) solution for estimating leaf N content in rice crops, from multispectral imagery. Our contribution is twofold: (i) a novel trajectory control strategy to reduce the angular wind-induced perturbations that affect image sampling accuracy during UAV flight, and (ii) machine learning models to estimate the canopy N via vegetation indices (VIs) obtained from the aerial imagery. This approach integrates an image processing algorithm using the GrabCut segmentation method with a guided filtering refinement process, to calculate the VIs according to the plots of interest. Three machine learning methods based on multivariable linear regressions (MLR), support vector machines (SVM), and neural networks (NN), were applied and compared through the entire phonological cycle of the crop: vegetative (V), reproductive (R), and ripening (Ri). Correlations were obtained by comparing our methods against an assembled ground-truth of SPAD measurements. The higher N correlations were achieved with NN: 0.98 (V), 0.94 (R), and 0.89 (Ri). We claim that the proposed UAV stabilization control algorithm significantly improves on the N-to-SPAD correlations by minimizing wind perturbations in real-time and reducing the need for offline image corrections.
Additional Information
© 2020 by the authors. Licensee MDPI, Basel, Switzerland. This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Received: 2 July 2020; Accepted: 22 September 2020; Published: 16 October 2020. (This article belongs to the Special Issue UAVs for Vegetation Monitoring) The authors would like to thank all CIAT staff that supported the experiments over the crops located at CIAT headquarters in Palmira, Valle del Cauca, Colombia; in particular to Yolima Ospina and Cecile Grenier for their support in upland and lowland trials. Also, to Carlos Devia from Javeriana University for the insights regarding the structuring of the datasets. This work was funded by the OMICAS program: Optimización Multiescala In-silico de Cultivos Agrícolas Sostenibles (Infraestructura y validación en Arroz y Caña de Azúcar), anchored at the Pontificia Universidad Javeriana in Cali and funded within the Colombian Scientific Ecosystem by The World Bank, the Colombian Ministry of Science, Technology and Innovation, the Colombian Ministry of Education and the Colombian Ministry of Industry and Tourism, and ICETEX under GRANT ID: FP44842-217-2018. Author Contributions: Conceptualization, J.D.C. (Julian D. Colorado), N.C.-B., F.C., and J.S.C. (Juan S. Caldas); methodology, J.D.C. (Julian D. Colorado), M.C.R., F.C., and A.J.-B.; software, N.C.-B., J.S.C. (Juan S. Caldas), and D.C.; validation, J.D.C. (Julian D. Colorado), I.F.M., E.P., D.C., N.C.-B., and J.S.C. (Juan S. Caldas); formal analysis and investigation, J.D.C. (Julian D. Colorado), M.C.R., E.P., F.C., I.F.M., and A.J.-B.; data curation, E.P.; writing—original draft preparation, J.D.C. (Julian D. Colorado) and F.C.; writing—review and editing, A.J.-B., I.F.M., and M.C.R.; supervision, A.J.-B. and J.D.C. (Julian D. Colorado). All authors have read and agreed to the published version of the manuscript. The authors declare no conflict of interest. Supplementary Materials: The following are available online at http://www.mdpi.com/2072-4292/12/20/3396/s1, FILE S1: RAW data supporting image segmentation metrics, multispectral imagery imagery used for machine learning testing, and nitrogen estimation results are available at the Open Science Framework: https://osf.io/cde6h/?view_only=1c4e5e03b9a34d3b96736ad8ab1b2774. FILE S2: Experimental protocol for crop monitoring available at https://www.protocols.io/view/protocol-bjxskpne. VIDEO S3: The video is available in the online version of this article. The video accompanying this paper illustrates the steps performed during the experiments.Attached Files
Published - remotesensing-12-03396-v2.pdf
Supplemental Material - remotesensing-12-03396-s001.zip
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Additional details
- Eprint ID
- 106116
- Resolver ID
- CaltechAUTHORS:20201016-131847873
- World Bank
- Ministry of Science, Technology and Innovation (Colombia)
- Ministry of Education (Colombia)
- Ministry of Industry and Tourism (Colombia)
- Instituto Colombiano de Crédito Educativo y Estudios Técnicos en el Exterior (ICETEX)
- FP44842-217-2018
- Created
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2020-10-16Created from EPrint's datestamp field
- Updated
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2021-11-16Created from EPrint's last_modified field