Signal separability in integrated neurophotonics
Abstract
A new modality Photonic probes record fluorescent signals by using arrays of light emitters and detectors embedded in neural tissue. Neither the emitted nor collected light fields are focused. Instead, in proposed configurations, hundreds of emitters will form rapid sequences of structured illumination patterns|providing sufficient spatial and temporal differentiation of neural signals for computational demixing. Here we define criteria for evaluating probe designs for achieving better signal separability. We find that probe geometry has profound, often unintuitive, effects on the separability of neural signals, providing initial design guidelines to achieve separation of individual cells in densely labeled populations.
Additional Information
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. Posted September 29, 2020. We thank Joseph Redford, a graduate student in Dr. Roukes' lab, for implementing light transport simulations used for earlier versions of this analysis circa 2015.Attached Files
Submitted - 2020.09.27.315556v2.full.pdf
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Additional details
- Eprint ID
- 105721
- DOI
- 10.1101/2020.09.27.315556
- Resolver ID
- CaltechAUTHORS:20201001-122032776
- Created
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2020-10-01Created from EPrint's datestamp field
- Updated
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2021-11-16Created from EPrint's last_modified field
- Caltech groups
- Division of Biology and Biological Engineering (BBE)