Published July 26, 2020 | Submitted
Discussion Paper Open

Enabling out-of-clinic human immunity studies via single-cell profiling of capillary blood

An error occurred while generating the citation.

Abstract

An individual's immune system is driven by both genetic and environmental factors that vary over time. To better understand the temporal and inter-individual variability of gene expression within distinct immune cell types, we developed a platform that leverages multiplexed single-cell sequencing and out-of-clinic capillary blood extraction to enable simplified, cost-effective profiling of the human immune system across people and time at single-cell resolution. Using the platform, we detect widespread differences in cell type-specific gene expression between subjects that are stable over multiple days.

Additional Information

The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license. Posted July 26, 2020. The authors have declared no competing interest. Data Availability: Gene expression matrix and relevant metadata are available on https://data.caltech.edu/records/1407. Genome and FASTQ files are not being released to protect the identity of the subjects. Code Availability: Custom code made for diurnal and subject specific gene detection is available on https://github.com/thomsonlab/capblood-seq.

Attached Files

Submitted - 2020.07.25.210468v1.full.pdf

Files

2020.07.25.210468v1.full.pdf
Files (1.9 MB)
Name Size Download all
md5:6ff73baa60879a7d691ae64735d57999
1.9 MB Preview Download

Additional details

Created:
August 19, 2023
Modified:
February 1, 2025