Published May 7, 2020
| Submitted
Technical Report
Open
Coding for Optimized Writing Rate in DNA Storage
Chicago
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Abstract
A method for encoding information in DNA sequences is described. The method is based on the precision-resolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis method. The suggested method optimizes the amount of information bits per synthesis time unit, namely, the writing rate. Additionally, the encoding scheme studied here takes into account the existence of multiple copies of the DNA sequence, which are independently distorted. Finally, quantizers for various run-length distributions are designed.
Additional Information
This work was supported in part by a United States–Israel Binational Science Foundation (BSF) under grant no. 2017652, and by NSF grants under grant nos. CCF-1816409, CCF-1755773, CCF-1816965, and CCF-1717884.Attached Files
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Additional details
- Eprint ID
- 103102
- Resolver ID
- CaltechAUTHORS:20200511-120246633
- Binational Science Foundation (USA-Israel)
- 2017652
- NSF
- CCF-1816409
- NSF
- CCF-1755773
- NSF
- CCF-1816965
- NSF
- CCF-1717884
- Created
-
2020-05-11Created from EPrint's datestamp field
- Updated
-
2021-06-24Created from EPrint's last_modified field
- Caltech groups
- Parallel and Distributed Systems Group
- Series Name
- Parallel and Distributed Systems Group Technical Reports
- Series Volume or Issue Number
- etr148