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Published January 8, 2020 | Published
Journal Article Open

Genus for biomolecules

Rubach, Paweł
Zając, Sebastian
Jastrzebski, Borys
Sulkowska, Joanna I. ORCID icon
Sułkowski, Piotr ORCID icon

Abstract

The 'Genus for biomolecules' database (http://genus.fuw.edu.pl) collects information about topological structure and complexity of proteins and RNA chains, which is captured by the genus of a given chain and its subchains. For each biomolecule, this information is shown in the form of a genus trace plot, as well as a genus matrix diagram. We assemble such information for all and RNA structures deposited in the Protein Data Bank (PDB). This database presents also various statistics and extensive information about the biological function of the analyzed biomolecules. The database is regularly self-updating, once new structures are deposited in the PDB. Moreover, users can analyze their own structures.

Additional Information

© 2019 The Author(s). Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Received August 15, 2019; Revised September 17, 2019; Editorial Decision September 19, 2019; Accepted October 02, 2019. Published: 04 October 2019. TEAM programme of the Foundation for Polish Science co-financed by the European Union under the European Regional Development Fund [POIR.04.04.00-00-5C55/17-00]; Polish Ministry for Science and Higher Education Grant [0003/ID3/2016/64] (to J.I.S.). Funding for open access charge: TEAM programme of the Foundation for Polish Science co-financed by the European Union under the European Regional Development Fund [POIR.04.04.00-00-5C55/17-00]. Conflict of interest statement. None declared.

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August 19, 2023
Modified:
October 18, 2023