Spectroscopic and DFT studies of second-sphere variants of the type 1 copper site in azurin: covalent and nonlocal electrostatic contributions to reduction potentials
Abstract
The reduction potentials (E^0) of type 1 (T1) or blue copper (BC) sites in proteins and enzymes with identical first coordination spheres around the redox active copper ion can vary by ~400 mV. Here, we use a combination of low-temperature electronic absorption and magnetic circular dichroism, electron paramagnetic resonance, resonance Raman, and S K-edge X-ray absorption spectroscopies to investigate a series of second-sphere variants--F114P, N47S, and F114N in Pseudomonas aeruginosa azurin--which modulate hydrogen bonding to and protein-derived dipoles nearby the Cu-S(Cys) bond. Density functional theory calculations correlated to the experimental data allow for the fractionation of the contributions to tuning E(0) into covalent and nonlocal electrostatic components. These are found to be significant, comparable in magnitude, and additive for active H-bonds, while passive H-bonds are mostly nonlocal electrostatic in nature. For dipoles, these terms can be additive to or oppose one another. This study provides a methodology for uncoupling covalency from nonlocal electrostatics, which, when coupled to X-ray crystallographic data, distinguishes specific local interactions from more long-range protein/active interactions, while affording further insight into the second-sphere mechanisms available to the protein to tune the E^0 of electron-transfer sites in biology.
Additional Information
© 2012 American Chemical Society. Received: July 7, 2012. Published: September 18, 2012. This work was supported by grants NSF CHE-0948211 (E.I.S.), NIH DK-31450 (E.I.S.), NIH RR-001209 (K.O.H.), NSF CHE-1058959 (Y.L). The SSRL Structural Molecular Biology program is supported by the Department of Energy, Office of Biological and Environmental Research, and by the National Institutes of Health, National Institute of General Medical Sciences (including P41GM103393), and the National Center for Research Resources (P41RR001209). R.G.H. acknowledges a Gerhard Casper Stanford Graduate Fellowship. We thank Yang Ha for help analyzing the S K-edge XAS data. The authors declare no competing financial interest.Attached Files
Accepted Version - nihms411881.pdf
Supplemental Material - ja306438n_si_001.pdf
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Additional details
- PMCID
- PMC3506006
- Eprint ID
- 87011
- Resolver ID
- CaltechAUTHORS:20180612-125943278
- NSF
- CHE-0948211
- NIH
- DK31450
- NIH
- RR-001209
- NSF
- CHE-1058959
- Department of Energy (DOE)
- NIH
- P41GM103393
- NIH
- P41RR001209
- Stanford University
- Created
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2018-06-12Created from EPrint's datestamp field
- Updated
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2021-11-15Created from EPrint's last_modified field