Published July 1, 2003
| Published
Journal Article
Open
SLAM web server for comparative gene finding and alignment
Chicago
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Abstract
SLAM is a program that simultaneously aligns and annotates pairs of homologous sequences. The SLAM web server integrates SLAM with repeat masking tools and the AVID alignment program to allow for rapid alignment and gene prediction in user submitted sequences. Along with annotations and alignments for the submitted sequences, users obtain a list of predicted conserved non-coding sequences (and their associated alignments). The web site also links to whole genome annotations of the human, mouse and rat genomes produced with the SLAM program. The server can be accessed at http://bio.math.berkeley.edu/slam.
Additional Information
© 2003 Oxford University Press. Received February 14, 2003; Revised and Accepted April 3, 2003. We thank Nicolas Bray for helping to set up the web server site. Colin Dewey has helped in performing and analyzing the SLAM whole genome runs. L.P. and S.C. are partially supported by a grant from the NIH (R01-HG02362-01). M.A. is supported by the Swedish Foundation for Strategic Research.Attached Files
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Additional details
- PMCID
- PMC168989
- Eprint ID
- 74934
- Resolver ID
- CaltechAUTHORS:20170308-152527629
- NIH
- R01-HG02362-01
- Swedish Foundation for Strategic Research
- Created
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2017-03-09Created from EPrint's datestamp field
- Updated
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2021-11-15Created from EPrint's last_modified field