Affine and Projective Tree Metric Theorems
- Creators
- Kleinman, Aaron
- Harel, Matan
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Pachter, Lior
Abstract
The tree metric theorem provides a combinatorial four-point condition that characterizes dissimilarity maps derived from pairwise compatible split systems. A related weaker four point condition characterizes dissimilarity maps derived from circular split systems known as Kalmanson metrics. The tree metric theorem was first discovered in the context of phylogenetics and forms the basis of many tree reconstruction algorithms, whereas Kalmanson metrics were first considered by computer scientists, and are notable in that they are a non-trivial class of metrics for which the traveling salesman problem is tractable. We present a unifying framework for these theorems based on combinatorial structures that are used for graph planarity testing. These are (projective) PC-trees, and their affine analogs, PQ-trees. In the projective case, we generalize a number of concepts from clustering theory, including hierarchies, pyramids, ultrametrics, and Robinsonian matrices, and the theorems that relate them. As with tree metrics and ultrametrics, the link between PC-trees and PQ-trees is established via the Gromov product.
Additional Information
© 2012 Springer Basel. Received March 4, 2011. We thank Laxmi Parida for introducing us to the applications of PQ-trees in biology during a visit to UC Berkeley in 2008. Thanks also to an anonymous reviewer whose careful reading of an initial draft of the paper helped us greatly. AK was funded by an NSF graduate research fellowship.Attached Files
Submitted - 1103.2384.pdf
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Additional details
- Eprint ID
- 74745
- Resolver ID
- CaltechAUTHORS:20170303-162557287
- NSF Graduate Research Fellowship
- Created
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2017-03-06Created from EPrint's datestamp field
- Updated
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2021-11-11Created from EPrint's last_modified field