Published May 11, 2015
| Submitted
Discussion Paper
Open
Near-optimal RNA-Seq quantification
Chicago
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Abstract
We present a novel approach to RNA-Seq quantification that is near optimal in speed and accuracy. Software implementing the approach, called kallisto, can be used to analyze 30 million unaligned paired-end RNA-Seq reads in less than 5 minutes on a standard laptop computer while providing results as accurate as those of the best existing tools. This removes a major computational bottleneck in RNA-Seq analysis.
Additional Information
Simulations and analysis: The parameters and procedures used for the results and figures in the paper are available via a snakefile16 at https://github.com/pachterlab/kallisto_paper_analysis. Software: The kallisto program is available for download from http://pachterlab.github.io/kallisto.Attached Files
Submitted - 1505.02710.pdf
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1505.02710.pdf
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Additional details
- Eprint ID
- 74699
- Resolver ID
- CaltechAUTHORS:20170303-114628470
- Created
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2017-03-03Created from EPrint's datestamp field
- Updated
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2023-06-02Created from EPrint's last_modified field