Welcome to the new version of CaltechAUTHORS. Login is currently restricted to library staff. If you notice any issues, please email coda@library.caltech.edu
Published May 14, 2016 | Submitted
Report Open

Negative Feedback Facilitates Temperature Robustness in Biomolecular Circuit Dynamics

Abstract

Temporal dynamics in many biomolecular circuits can change with temperature because of the temperature dependence of underlying reaction rate parameters. It is generally unclear what circuit mechanisms can inherently facilitate robustness in the dynamics to variations in temperature. Here, we address this issue using a combination of mathematical models and experimental measurements in a cell-free transcription-translation system. We find that negative transcriptional feedback can reduce the effect of temperature variation on circuit dynamics. Further, we find that effective negative feedback due to first-order degradation mechanisms can also enable such a temperature robustness effect. Finally, we estimate temperature dependence of key parameters mediating such negative feedback mechanisms. These results should be useful in the design of temperature robust circuit dynamics.

Additional Information

The copyright holder for this preprint is the author/funder. It is made available under a CC-BY-NC-ND 4.0 International license. bioRxiv preprint first posted online Jul. 22, 2014. We gratefully acknowledge C. Hayes for her help with the experimental part of this work, especially for providing the constructs for the negative feedback circuit and the constitutive promoter as well as for the measurement protocol.

Attached Files

Submitted - 007385.full.pdf

Files

007385.full.pdf
Files (1.8 MB)
Name Size Download all
md5:ddc2fec6a977e51ec50f3af78124f555
1.8 MB Preview Download

Additional details

Created:
August 20, 2023
Modified:
October 18, 2023