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Published October 13, 2014 | Accepted Version + Supplemental Material
Journal Article Open

Structural, Functional, and Spectroscopic Characterization of the Substrate Scope of the Novel Nitrating Cytochrome P450 TxtE

Abstract

A novel cytochrome P450 enzyme, TxtE, was recently shown to catalyze the direct aromatic nitration of L-tryptophan. This unique chemistry inspired us to ask whether TxtE could serve as a platform for engineering new nitration biocatalysts to replace current harsh synthetic methods. As a first step toward this goal, and to better understand the wild-type enzyme, we obtained high-resolution structures of TxtE in its substrate-free and substrate-bound forms. We also screened a library of substrate analogues for spectroscopic indicators of binding and for production of nitrated products. From these results, we found that the wild-type enzyme accepts moderate decoration of the indole ring, but the amino acid moiety is crucial for binding and correct positioning of the substrate and therefore less amenable to modification. A nitrogen atom is essential for catalysis, and a carbonyl must be present to recruit the αB′1 helix of the protein to seal the binding pocket.

Additional Information

© 2014 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim. Received: May 15, 2014. Published online on September 2, 2014. We thank Dr. Jens Kaiser and Dr. Pavle Nikolovski of the Beckman Molecular Observatory (Caltech) for assistance with crystallography and Dr. Scott Virgil and the 3CS Center for Catalysis and Chemical Synthesis (Caltech) for assistance with LC-MS analyses. The authors thank the Resnick Sustainability Institute (Caltech) (support to J.K.B.C.) and Dow Chemical Company for support through the Dow-Resnick innovation program. S.C.D. and J.A.M. are supported by Ruth L. Kirschstein NRSA postdoctoral fellowships from the National Institutes of Health (5F32M106618 and 5F32M101792, respectively). T.H. is supported by a postdoctoral fellowship from the Swiss National Science Foundation (Fellowship PBBSP2_146809). The Beckman Molecular Observatory is supported by the Gordon and Betty Moore Foundation, the Beckman Institute, and the Sanofi-Aventis Bioengineering Research Program (Caltech). The authors thank Dr. Fei Sun for sharing of the XL1-Blue E. coli strain and helpful discussions. The content of this paper is solely the responsibility of the authors and does not represent the official views of any of the funding agencies.

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Accepted Version - nihms637153.pdf

Supplemental Material - cbic_201402241_sm_miscellaneous_information.pdf

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August 22, 2023
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