Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework
Abstract
This paper describes a pilot query interface that has been constructed to help us explore a "concept-based" approach for searching the Neuroscience Information Framework (NIF). The query interface is concept-based in the sense that the search terms submitted through the interface are selected from a standardized vocabulary of terms (concepts) that are structured in the form of an ontology. The NIF contains three primary resources: the NIF Resource Registry, the NIF Document Archive, and the NIF Database Mediator. These NIF resources are very different in their nature and therefore pose challenges when designing a single interface from which searches can be automatically launched against all three resources simultaneously. The paper first discusses briefly several background issues involving the use of standardized biomedical vocabularies in biomedical information retrieval, and then presents a detailed example that illustrates how the pilot concept-based query interface operates. The paper concludes by discussing certain lessons learned in the development of the current version of the interface.
Additional Information
© The Author(s) 2008. This article is published with open access at Springerlink.com. This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. Published online: 25 October 2008. This project has been funded in whole or in part through the NIH Blueprint for Neuroscience Research with Federal funds from the National Institute on Drug Abuse, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN271200577531C. This research was also supported by NIH grants P01 DC04732 and R01 DA021253, Volunteer consultant-collaborators and friends, and The Society for Neuroscience.Attached Files
Published - Marenco2008p3000Neuroinformatics.pdf
Accepted Version - nihms97990.pdf
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Additional details
- PMCID
- PMC2664632
- Eprint ID
- 22936
- Resolver ID
- CaltechAUTHORS:20110316-131549531
- NIH
- HHSN271200577531C
- NIH
- P01 DC04732
- NIH
- R01 DA021253
- Society for Neuroscience
- National Institute on Drug Abuse
- Created
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2011-03-16Created from EPrint's datestamp field
- Updated
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2021-11-09Created from EPrint's last_modified field