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Published February 5, 2007 | Accepted Version
Journal Article Open

Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity

Abstract

The mechanical properties of DNA play a critical role in many biological functions. For example, DNA packing in viruses involves confining the viral genome in a volume (the viral capsid) with dimensions that are comparable to the DNA persistence length. Similarly, eukaryotic DNA is packed in DNA–protein complexes (nucleosomes), in which DNA is tightly bent around protein spools. DNA is also tightly bent by many proteins that regulate transcription, resulting in a variation in gene expression that is amenable to quantitative analysis. In these cases, DNA loops are formed with lengths that are comparable to or smaller than the DNA persistence length. The aim of this review is to describe the physical forces associated with tightly bent DNA in all of these settings and to explore the biological consequences of such bending, as increasingly accessible by single‐molecule techniques.

Additional Information

© 2006 Wiley Periodicals, Inc. Received 25 October 2006; accepted 26 October 2006; Published online 13 November 2006. We are extremely grateful to a number of people who have given us both guidance and amusement in thinking about these problems (and some for commenting on the manuscript): Sankar Adhya, David Bensimon, Laura Finzi, Bill Gelbart, Jeff Gelles, Uli Gerland, Shura Grosberg, Jack Johnson, Jason Kahn, John Maddocks, Jim Maher, Ian Molineux, Wilma Olson, Prashant Purohit, Michael Rubenstein, Robert Schleif, Andy Spakowitz, Elizabeth Villa, and Nils Walter. RP, PG, LH, MI and PW acknowledge the support of the Keck Foundation, National Science Foundation grant Nos. CMS‐0301657 and CMS‐0404031, and the National Institutes of Health Director's Pioneer Award grant No. DP1 OD000217. HG is grateful for support from both the NSF funded NIRT and the NIH Director's Pioneer Award. JK acknowledges the support of NSF DMR‐0403997 and is a Cottrell Scholar of Research Corporation. PN acknowledges NSF Grant DMR04–04674 and the NSF‐funded NSEC on Molecular Function at the Nano/Bio Interface DMR04–25780. JW acknowledges support from NIH grants R01GM054692 and R01GM058617.

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August 22, 2023
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