Effects of Peptide Length and Composition on Binding to an Empty Class I MHC Heterodimer

Abstract

Class I major histocompatibility complex (MHC) proteins present peptide antigens to T cells during the immune response against viruses. Peptides are loaded into newly synthesized class I heterodimers in the endoplasmic reticulum such that most or all cell surface class I molecules contain peptides derived from endogenous or foreign proteins. We previously reported the assembly of empty heterodimers of the murine class I MHC molecule H-2K^d, from denatured heavy and light chains from which endogenous peptides had been removed [Fahnestock et al. (1992) Science 258,1658-16621. Here we measure thermal stability profiles of empty versus peptide-filled molecules and compare the effects of human versus murine light chains on the overall stability of the K^d heterodimer. The majority of empty heterodimers are stable at 37 °C regardless of the species of light chain, indicating that our previous report of the unexpectedly high thermal stability was an intrinsic property of the K^d molecule and not due to use of a murine/human chimeric protein. Binding constants arederived for a series of peptides interacting with empty K^d heterodimers. The dissociation constants of four known K^d-restricted peptides range from 2.3 X 10^(-7) to 3.4 X 10^(-8) M. Using a series of 24 analog peptides, the effects of length and peptide composition on binding affinity of one K^d-restricted peptide are explored, and the results are interpreted with reference to the known three dimensional structures of class I MHC protein/peptide complexes.

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