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Published October 2016 | Published + Supplemental Material
Journal Article Open

Transcriptomic response of Drosophila melanogaster pupae developed in hypergravity

Abstract

Altered gravity can perturb normal development and induce corresponding changes in gene expression. Understanding this relationship between the physical environment and a biological response is important for NASA's space travel goals. We use RNA-Seq and qRT-PCR techniques to profile changes in early Drosophila melanogaster pupae exposed to chronic hypergravity (3 g, or three times Earth's gravity). During the pupal stage, D. melanogaster rely upon gravitational cues for proper development. Assessing gene expression changes in the pupae under altered gravity conditions helps highlight gravity-dependent genetic pathways. A robust transcriptional response was observed in hypergravity-treated pupae compared to controls, with 1513 genes showing a significant (q < 0.05) difference in gene expression. Five major biological processes were affected: ion transport, redox homeostasis, immune response, proteolysis, and cuticle development. This outlines the underlying molecular and biological changes occurring in Drosophila pupae in response to hypergravity; gravity is important for many biological processes on Earth.

Additional Information

© 2016 Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). Received 11 May 2016, Revised 12 August 2016, Accepted 8 September 2016, Available online 10 September 2016. This work was funded by NASA grants to SB (NNX15AB42G and NNX13AN38G). RH was supported by a NASA Post-Doctoral Program (NPP) Fellowship. SH was supported by the NSF Graduate Research Fellowship. This work used the Vincent J. Coates Genomics Sequencing Laboratory at UC Berkeley, supported by NIH S10 Instrumentation Grants S10RR029668 and S10RR027303. Authors' contributions: SH, RH, and SB wrote the manuscript text. RH and SRB carried out the experiments. SH performed the sequencing library preparation. SH performed bioinformatic analysis including QC, mapping, expression estimates, and differential expression analysis; pathway analysis was performed jointly by SH and RH. RH and SRB performed qRT-PCR and corresponding analysis. SB and LP supervised the research and edited the manuscript text. All authors read and approved the final manuscript. The authors declare that they have no competing interests.

Attached Files

Published - 1-s2.0-S088875431630088X-main.pdf

Supplemental Material - mmc1.pdf

Supplemental Material - mmc10.docx

Supplemental Material - mmc2.pdf

Supplemental Material - mmc3.pdf

Supplemental Material - mmc4.zip

Supplemental Material - mmc5.xlsx

Supplemental Material - mmc6.txt

Supplemental Material - mmc7.txt

Supplemental Material - mmc8.txt

Supplemental Material - mmc9.txt

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Additional details

Created:
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