Reference based annotation with GeneMapper
- Creators
- Chatterji, Sourav
-
Pachter, Lior
Abstract
We introduce GeneMapper, a program for transferring annotations from a well annotated genome to other genomes. Drawing on high quality curated annotations, GeneMapper enables rapid and accurate annotation of newly sequenced genomes and is suitable for both finished and draft genomes. GeneMapper uses a profile based approach for mapping genes into multiple species, improving upon the standard pairwise approach. GeneMapper is freely available for academic use.
Additional Information
© Chatterji and Pachter; licensee BioMed Central Ltd. 2006. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Received: 24 November 2005. Accepted: 3 March 2006. Published: 5 April 2006. We thank Colin Dewey and Narayanan Manikandan for their helpful suggestions and comments. The work was partially funded by NIH grants R01:HG02632-1 and U01:HG003150-01.Attached Files
Published - art_3A10.1186_2Fgb-2006-7-4-r29.pdf
Supplemental Material - 13059_2005_1297_MOESM1_ESM.tgz
Supplemental Material - 13059_2005_1297_MOESM2_ESM.tgz
Supplemental Material - 13059_2005_1297_MOESM3_ESM.tgz
Supplemental Material - 13059_2005_1297_MOESM4_ESM.eps
Supplemental Material - 13059_2005_1297_MOESM5_ESM.eps
Supplemental Material - 13059_2005_1297_MOESM6_ESM.eps
Supplemental Material - 13059_2005_1297_MOESM7_ESM.eps
Files
| Name | Size | Download all |
|---|---|---|
|
md5:c84528459fc1081cb9ac250f29c406d4
|
73.5 MB | Download |
|
md5:97575c401ee31df0e1f256a80cf05089
|
1.0 MB | Download |
|
md5:8c4d614df524bf1d67ee20f89d68ae8b
|
8.2 MB | Download |
|
md5:f07bf01ca23383a641abfb0309dbd4d6
|
814.5 kB | Download |
|
md5:84d4871ebbe584e43edc6756770bef5a
|
671.7 kB | Download |
|
md5:6052b143b64149bf5def91f7e65407fc
|
589.3 kB | Preview Download |
|
md5:76a74a74dbf6f8aa6543aa2b4bd843e5
|
548.8 kB | Download |
|
md5:6838cafc27ee00d2af25830704839e35
|
275.1 kB | Download |
Additional details
- PMCID
- PMC1557983
- Eprint ID
- 74873
- Resolver ID
- CaltechAUTHORS:20170307-162728814
- R01 HG02632-1
- NIH
- U01 HG003150-01
- NIH
- Created
-
2017-03-08Created from EPrint's datestamp field
- Updated
-
2021-11-15Created from EPrint's last_modified field