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Published November 5, 2003 | Supplemental Material
Journal Article Open

Toward artificial developmental regulators

Abstract

A polyamide-peptide conjugate is designed which recruits sequence specifically the developmental regulator Exd to a cognate DNA site. In particular, an eight-ring hairpin polyamide (Im-Im-Py(C3H6NHR)-Py-gamma-Im-Py-Py-Py-beta-Dp) with a heptapeptide (R = Ac-Phe-Tyr-Pro-Trp-Met-Lys-Gly-) attached on a central ring was shown to induce cooperative binding of the Drosophila Hox protein cofactor Exd with a Kd of 4.4 nM in vitro, an order of magnitude more efficient than the natural Hox protein partner Ubx. The conjugate joins two sequence specific domains, one for DNA and one for the protein. This small molecule thus serves as a cooperative protein-DNA dimerizer, which mimics the natural Hox family of developmental regulators.

Additional Information

© 2003 American Chemical Society. Received July 8, 2003. Publication Date (Web): October 9, 2003. This work was supported in part by the UW-I & EDR and Steenbock Funds to A.Z.A., a NIH grant to P.B.D., and a DAAD postdoctoral fellowship to H.D.A.

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