Engineered Bacterial Mimics of Human Drug Metabolizing Enzyme CYP2C9

Abstract

Simple and universal methods for the preparation of human drug metabolites are required to produce quantities sufficient for their characterization and toxicity testing. Synthetic chemistry lacks general catalysts for selective oxidation of unactivated C[BOND]H bonds, a transformation that plays a key role in metabolism; bioconversions using P450 enzymes have emerged as a powerful alternative. Variants of P450BM3 from Bacillus megaterium act on diverse substrates, including drugs. Acidic substrates, such as the compounds metabolized by CYP2C9, which is one of three main hepatic human P450s, are not accepted by P450_(BM3) variants engineered to date. Herein, we report bacterial mimics of CYP2C9, which are active on two widely administered drugs, naproxen and ibuprofen, that are CYP2C9 substrates in vivo. These P450_(BM3) variants can also act on desmethylnaproxen, the human metabolite of naproxen, and convert it to the 1,4-naphthoquinone derivative. We analyzed the crystal structure of the heme domain of an early intermediate in the directed-evolution experiment. The active site mutation, L75R, which initially conferred activity on charged substrates, dramatically increased structural flexibility in the B′-helix. This increased flexibility, which was accompanied by a dramatic decrease in enzyme stability, may contribute to the variant's ability to accept a broader range of substrates.

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